In June 2005, the Bachelor of Science in Computer Science offered 2 Majors: Graphics and Visualization and Artificial Intelligence. The Bachelor of Science in Information Technology program also offered 2 majors: Multimedia, and  Database and Net-Centric Programming

In June 2007, Dr. Bee Ching U. Ong Kian Koc was installed as the new CKSC president, replacing Mrs. Joan Sy Cotio who had retired from service. The Bachelor of Science in Nursing program was also granted CHED’s Recognition effective SY 2007-2008. On the same year, the Bachelor of Science in Information Management was renamed Bachelor of Science in Information System.

The Master of Science in Education (MA Ed.) program was approved by CHED and the Bachelor of Science in Hotel and Restaurant Management (BSHRM) program was re-opened in the school year 2008-2009. BSHRM is currently offered as a Ladderized Education Program (LEP). The HRM Education Center was also constructed and completed at that time. In 2009-2010, CKSC-FBAS launched the Bachelor of Science in Entrepreneurship (BS Entrep) and the Bachelor of Science in Accounting Tecnology (BSAct) programs. BS Entrep was eventually granted government recognition by CHED in May 2013.

With the appointment of Dr. Dory Poa as College President in June 2013, CKS College continues to innovate and develop in terms of its course offerings, facilities, and administrative practices.